BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002F06SP1|AL424998
(845 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1504 1497 0.0
>3x_Contig1504
Length = 9288
Score = 1497 bits (735), Expect = 0.0
Identities = 803/845 (95%), Gaps = 2/845 (0%)
Strand = Plus / Plus
Query: 3 ttttttttgctcttttgtgtacagcttaggcaaatgccgtacatacaaaaagacatcaga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5685 ttttttttgctcttttgtgtacagcttaggcaaatgccgtacatacaaaaagacatcaga 5744
Query: 63 agagagtatataaggwgggggattaamcttcaaggagtcctgacatttaamattcactat 122
||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 5745 agagagtatataaggtgggggattaaccttcaaggagtcctgacatttaacattcactat 5804
Query: 123 ttattgactcttttgtktacatctcatcattagtctcggtatatttwaraatatttagct 182
|||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 5805 ttattgactcttttgtgtacatctcatcattagtctcggtatattttagaatatttagct 5864
Query: 183 tttctatttwatwtcgtctcaactacctagtaacagtacggtaatattcatactaawacg 242
||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5865 tttctattttatttcgtctcaactacctagtaacagtacggtaatattcatactaatacg 5924
Query: 243 acctaagtwctcaagttaaaawaaaactcacwagttcaacgatgaaattctctacaactt 302
|||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 5925 acctaagttctcaagttaaaataaaactcactagttcaacgatgaaattctctacaactt 5984
Query: 303 tcgctttggtttctgctgctttggtctctgttgcctctgctcaaacwamaactgccaawg 362
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct: 5985 tcgctttggtttctgctgctttggtctctgttgcctctgctcaaactacaactgccaatg 6044
Query: 363 actccgctgctggtaacgacaccactgamaacgctgctgttggtatcggtatgaatgcct 422
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 6045 actccgctgctggtaacgacaccactgacaacgctgctgttggtatcggtatgaatgcct 6104
Query: 423 tcggttcttctttggctggtgctgctgtcgctggtgcgatcgcctttwtgatgtaagtat 482
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 6105 tcggttcttctttggctggtgctgctgtcgctggtgcgatcgcctttttgatgtaagttt 6164
Query: 483 aggttttctattgaaacctatttawwagtccctatwttttttcaacactctaataaataa 542
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 6165 aggttttctattgaaacctatttattagtccctattttttttcaacactctaataaataa 6224
Query: 543 acwttgcatctttgagacawatctttctttgaaatgatggtataaaaaawgtccaacaac 602
|| |||||||||||||||| ||||||||||||||||||||||||| | ||||||||||
Sbjct: 6225 actttgcatctttgagacatatctttctttgaaatgatggtataatatttgtccaacaac 6284
Query: 603 tttacaagtactttctgtctttagagtgcgtcatttgacaaggttttcagttcgtgttaa 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6285 tttacaagtactttctgtctttagagtgcgtcatttgacaaggttttcagttcgtgttaa 6344
Query: 663 ttwtwctatttwhwcttcccacacagacgatggggcgagagacttcttgtkttcatcaaa 722
|| | |||||| |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 6345 tttttctattttttcttcccacacagacgatggggcgagagactgcttgttttcatcaaa 6404
Query: 723 ctctcagtktctctacccttcttctgtgaytttaatgwggtttttttttgtg-ttttttt 781
|||||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||||
Sbjct: 6405 ctctcagtttctctacccttcttctgtgactttaatgaggtttttttttgtgtttttttt 6464
Query: 782 tcgttgcatattgttattgtgacgtttatag-caagaccawaattattataacaacactt 840
||||||||||||||||||||||||| || || |||||||| |||||||||||||||||||
Sbjct: 6465 tcgttgcatattgttattgtgacgtctaaagccaagaccaaaattattataacaacactt 6524
Query: 841 aagaa 845
|||||
Sbjct: 6525 aagaa 6529
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.41 0.716 1.34
Gapped
Lambda K H
1.41 0.716 1.34
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5144
Number of Sequences: 1807
Number of extensions: 5144
Number of successful extensions: 166
Number of sequences better than 1.0e-20: 1
length of query: 845
length of database: 10,358,551
effective HSP length: 16
effective length of query: 829
effective length of database: 10,329,639
effective search space: 8563270731
effective search space used: 8563270731
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.5 bits)
S1: 12 (24.9 bits)
S2: 49 (100.3 bits)